PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1535
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 216aa    MW: 23985.1 Da    PI: 6.5932
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1535genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY223.46.3e-6961682168
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                  ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++kas    +lla+  h de  +  + ee + ++         ++s ++s
  Gh_D01G1535   6 HLFDLPEQICYVQCGFCTTILLVSVPRSSLSMVVTVRCGHCTSLLSVNMMKASfvplHLLASFAHDDEPKEGAVSEEVGGHR---------KTSDRRS 94 
                  7899*********************************************999855555555555533322222333332222.........2222222 PP

        YABBY  96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                   s ++ s+n +e++ rv p v++PPekrqr+Psaynrfikeei+r+k++nP+i h+eafs+aaknWahfP+ih 
  Gh_D01G1535  95 PSLMSSSDNGEEDIVRVNPtVNKPPEKRQRAPSAYNRFIKEEIRRLKTQNPNIPHKEAFSTAAKNWAHFPPIHK 168
                  22223378999999999888*****************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.8E-6411168IPR006780YABBY protein
SuperFamilySSF470957.2E-9114165IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.2E-6116168IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSTLNHLFDL PEQICYVQCG FCTTILLVSV PRSSLSMVVT VRCGHCTSLL SVNMMKASFV  60
PLHLLASFAH DDEPKEGAVS EEVGGHRKTS DRRSPSLMSS SDNGEEDIVR VNPTVNKPPE  120
KRQRAPSAYN RFIKEEIRRL KTQNPNIPHK EAFSTAAKNW AHFPPIHKHN KGEGESCEQD  180
EGEASWNVEA TEVGFKIICP FLGDAVGNEV FTASLY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5835592e-43JX583559.1 Gossypium hirsutum clone NBRI_GE16632 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467406.11e-141PREDICTED: axial regulator YABBY 4 isoform X1
SwissprotQ9LDT35e-76YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A061E6861e-112A0A061E686_THECC; Plant-specific transcription factor YABBY family protein
STRINGVIT_01s0127g00330.t012e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80442740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-72YABBY family protein